Publications:

The Wildcat Toolbox: A Set of Perl Script Utilities for Use in Peptide Mass Spectral Database Searching and Proteomics Experiments .  Paul A. Haynes, Susan Miller, Tim Radabaugh, Michael Galligan, Linda Breci, James Rohrbough, Fatimah Hickman and Nirav Merchant  Journal of Biomolecular Techniques, 17:97-102

Epigenomic changes during leukemia cell differentiation: analysis of histone acetylation and cytosine methylation using CpG island microarrays
Nouzova M, Holtan N, Oshiro MM, Isett RB, Munoz-Rodriguez JL, List AF, Narro ML, Miller SJ, Merchant NC, Futscher BW.
J Pharmacol Exp Ther. 2004 Dec;311(3):968-81. Epub 2004 Aug 9

Rapid Divergence of Microsatellite Abundance among Species of Drosophila
Charles L. Ross , Kelly A. Dyer, Tamar Erez, Susan J. Miller, John Jaenike, Therese A. Markow
Molecular Biology and Evolution, doi:10.1093/molbev/msg137

Bioinformatics: Sequence and Genome Analysis, 2nd Ed.  CSHL Press, Plainview, N.Y., 2004. Mount, D.W. Chapter 12 by Nirav Merchant and Susan J. Miller. (Book Website)

Acknowledgements:

Evaluating and improving cDNA sequence quality with cQC
Celine A. Hayden ¹, Travis J. Wheeler ², and Richard A. Jorgensen
Bioinformatics 2005 21:22 ####-#### advanced access pdf

Molecular Correlates of Genes Exhibiting RNAi Phenotypes in Caenorhabditis elegans
Asher D. Cutter, Bret A. Payseur, Tovah Salcedo, Anne M. Estes, Jeffrey M. Good, Elizabeth Wood, Thomas Hartl, Heather Maughan, Jannine Strempel, Baomin Wang, Anthony C. Bryan and Melissa Dellos
Genome Research 13:2651-2657, 2003

Molecular and Comparative Genetics of Mental Retardation
Jennifer K. Inlow and Linda L. Restifo
Genetics, Vol. 166, 835-881, February 2004