ARL Division of Biotechnology Computing Facility - The University of Arizona

Software Resources

These are software resources available at our facility.

Sequence Analysis and Processing - Amadeus

Xwindows (BioDesk)

GCG/SeqLab

Staden Package

Trev , Pregap4 , Gap4, many others

Command Line (Unix)

GCG

EMBOSS Utilities

CoreSearch

readseq (sequence format conversion)

genscript (convert text files tp PostScript)

makecgm (publishing)

Molecular Modeling - Gilmour

Molecular Visualization

Microarray Data

SpotFinding: softWoRx Tracker
Data Analysis:

Affymetrix MAS 5.0, DMT, GCOS
R, Bioconductor
TIGR Tools

See Also: BCF Microarray Data Anaylsis Service

Statistical Packages

SAS, SPSS, Splus, Matlab available on U-cluster machines.

Campus Supercomputer

BLAST, CLUSTAL, HMMER, FASTA, PAML suite, SNAP exon finder, Roche gsAssembler, etc.

Utilities