Publications & Acknowledgements

Listed below is a select list of recent publications and acknowledgements:


Epigenome-wide analysis links SMAD3 methylation at birth to asthma in children of asthmatic mothers.  DeVries A, Wlasiuk G, Miller SJ, Bosco A, Stern DA, Lohman IC, Rothers J, Jones AC, Nicodemus-Johnson J, Vasquez MM, Curtin JA, Simpson A, Custovic A, Jackson DJ, Gern JE, Lemanske RF Jr, Guerra S, Wright AL, Ober C, Halonen M, Vercelli D. J Allergy Clin Immunol 2016 Dec 21. pii: S0091-6749(16)32459-9. doi: 10.1016/j.jaci.2016.10.041

Genome sequence and mutational analysis of plant-growth-promoting bacterium Agrobacterium tumefaciens CCNWGS0286 Isolated from a zinc-lead mine tailing.  Hao X, Xie P, Johnstone L, Miller SJ, Rensing C, Wei G. Appl Environ Microbiol. 2012 Aug;78(15):5384-94. doi: 10.1128/AEM.01200-12. Epub 2012 May 25. PMID: 22636006

Characterization and genomic analysis of chromate resistant and reducing Bacillus cereus strain SJ1.  Minyan He, Xiangyang Li, Liang Guo, Susan J Miller, Christopher Rensing  and Gejiao Wang BMC Microbiology 2010, 10:221

The Wildcat Toolbox: A Set of Perl Script Utilities for Use in Peptide Mass Spectral Database Searching and Proteomics Experiments .  Paul A. Haynes, Susan Miller, Tim Radabaugh, Michael Galligan, Linda Breci, James Rohrbough, Fatimah Hickman and Nirav Merchant  Journal of Biomolecular Techniques,J Biomol Tech. 2006 Apr; 17(2): 97–102.

Transcript profiling in peripheral T-cell lymphoma, not otherwise specified, and diffuse large B-cell lymphoma identifies distinct tumor profile signatures Daruka Mahadevan; Catherine Spier; Kimiko Della Croce; Susan Miller; Benjamin George; Chris Riley; Stephen Warner; Thomas M. Grogan; Thomas P. Miller,doi: 10.1158/1535-7163.MCT-05-0146 Mol Cancer Ther December 2005 4; 1867

Epigenomic changes during leukemia cell differentiation: analysis of histone acetylation and cytosine methylation using CpG island microarrays  Nouzova M, Holtan N, Oshiro MM, Isett RB, Munoz-Rodriguez JL, List AF, Narro ML, Miller SJ, Merchant NC, Futscher BW.
J Pharmacol Exp Ther. 2004 Dec;311(3):968-81. Epub 2004 Aug 9

Rapid Divergence of Microsatellite Abundance among Species of Drosophila
Charles L. Ross , Kelly A. Dyer, Tamar Erez, Susan J. Miller, John Jaenike, Therese A. Markow
Molecular Biology and Evolution, doi:10.1093/molbev/msg137

Bioinformatics: Sequence and Genome Analysis, 2nd Ed.  CSHL Press, Plainview, N.Y., 2004. Mount, D.W. Chapter 12 by Nirav Merchant and Susan J. Miller. (Book Website)


Evaluating and improving cDNA sequence quality with cQC
Celine A. Hayden 1, Travis J. Wheeler 2, and Richard A. Jorgensen
Bioinformatics 2005 21:22

Molecular Correlates of Genes Exhibiting RNAi Phenotypes in Caenorhabditis elegans
Asher D. Cutter, Bret A. Payseur, Tovah Salcedo, Anne M. Estes, Jeffrey M. Good, Elizabeth Wood, Thomas Hartl, Heather Maughan, Jannine Strempel, Baomin Wang, Anthony C. Bryan and Melissa Dellos
Genome Research 13:2651-2657, 2003

Molecular and Comparative Genetics of Mental Retardation
Jennifer K. Inlow and Linda L. Restifo
Genetics, Vol. 166, 835-881, February 2004