Software Resources
Sequence Analysis and Processing -
Amadeus
Xwindows (BioDesk)
Command Line (Unix)
- readseq (sequence format conversion)
- genscript (convert text files tp PostScript)
- makecgm (publishing)
Molecular Modeling - Gilmour
Molecular Visualization
Microarray Data
- SpotFinding
- softWoRx Tracker
- Data Analysis
Affymetrix MAS 5.0, DMT, GeneSpring, R, Bioconductor, TIGR Tool
Biological Association Networks
Statistical Packages
- SAS, SPSS, Splus, Matlab available on U-cluster machines.
Campus Supercomputer
- BLAST, CLUSTAL, HMMER, FASTA, PAML suite, SNAP exon finder, PaCE EST Clustering, etc.
Utilities
