Using Nextflow for Streamlining Bioscience Analysis Pipelines

Tired of waiting and executing scripts? Learn automation with NextFlow, a pipeline manager that simplifies complex pipeline analyses, saving time and reducing errors. Workshop will focus on bioscience examples, but Nextflow can be utilized with many disciplines. 

Requirements: 

• Basic command line knowledge 

• A registered CyVerse account (Register for CyVerse account)
   

SERIES: Exploring Tools for Data Analysis and AI Applications in Biosciences and Genomics

When:  Tuesdays, 3 - 4 pm, Sept. 3 - Oct. 29, 2024
Where:  Weaver Science-Engineering Library, Rm 212 and on Zoom 
Instructor: Michele Cosi  and Carlos Lizárraga
YouTube: Links will be added after the workshops have been presented.

Workshop Materials

• 09/03  Exploring Analysis  Platforms and High-Performance Computing Resources for Bioinformatics  - YouTube

• 09/10  Intro to Essential Tools for Every Bioinformatician - YouTube

• 09/17  An Introduction to Sequence Manipulation, Alignment, and Assessment for Bioscience Analyses - YouTube

• 09/24  Using Nextflow for Streamlining Bioscience Analysis Pipelines - YouTube

• 10/01  Using Snakemake for Streamlining Data Analysis Pipelines  - YouTube 

• 10/08  A Beginners Guide to Gene Expression: Diving into DESeq Analysis - YouTube

• 10/15  Fundamentals of Data Visualization - YouTube

• 10/22  Explore Current AI/ML Trends and Tools in Bioinformatics  

• 10/29  Using MLFlow to Track Machine Learning Projects in Bioinformatics - YouTube